Faculty

Ph.D.

8+ years of Post Ph.D. Research/Teaching experience

DSC3103/4103: S&EDA
DSC3107/4107: Big Data Tools and Tech.
DSC3110/4110: S&EDA Lab.
BTE2303: Biostatistics
BTC 5001: PhD-RM & CA
BTC 5003: PhD-Bioinformatics
BTH 4206: Biostatistics
BTH 6806: Biostatistics
DSC 3202/4202: RT& A
DSC 3209/4209: RT& A Lab.
DSC4301: Generalized and Linear Modeling
DSC4308: Generalized and Linear Modeling Lab.

Artificial intelligence (AI) approach for the prediction of RNA binding proteins (RBPs) functional motifs, Free energy landscape analysis, Machine learning (ML), Computational Biophysics

Publications:

https://scholar.google.co.in/citations?user=rmm5am4AAAAJ&hl=ena (h-index: 14, i10-index: 20)

1. Kumar N, Srivastava R, Prakash A*, Lynn AM*. Structure-based virtual screening, molecular dynamics simulation and MM-PBSA toward identifying the inhibitors for two-component regulatory system protein NarL of Mycobacterium Tuberculosis. J Biomol Struct Dyn. 2019 Aug 26:1-15. doi: 10.1080/07391102.2019.1657499.

2. Kumar V*, Pandey P, Prakash A*, and Lynn AM. Delineating the Effect of Mutations on the Conformational Dynamics of N-Terminal Domain of TDP-43. Biophys Chem. 2019 Jul; 250:106174. doi: 10.1016/j.bpc.2019.106174.

3. Mongre RK, Mishra CB, Prakash A, Jung S, Lee BS, Kumari S, Hong JT, Lee MS. Novel Carbazole-Piperazine Hybrid Small Molecule Induces Apoptosis by Targeting BCL-2 and Inhibits Tumor Progression in Lung Adenocarcinoma in Vitro and Xenograft Mice Model. Cancers (Basel). 2019 Aug 25;11(9). pii: E1245. doi: 10.3390/cancers11091245.

4. Kumar V*, Prakash A*, Pandey P, Lynn AM, Hassan MI. TFE-induced local unfolding and fibrillation of SOD1: bridging the experiment and simulation studies. Biochem J. 2018 May 18;475(10):1701-1719.

5. Prakash A*, Dixit G, Meena NK, Singh R, Vishwakarma P, Mishra S, Lynn AM*. Elucidation of stable intermediates in urea-induced unfolding pathway of human carbonic anhydrase IX. J Biomol Struct Dyn. 2018 Jul;36(9):2391-2406.

BIG DATA TOOLS & TECHNOLOGIES, STATISTICAL TOOLS AND IMPLICATIONS, MACHINE LEARNING

53

ISCB (International Society for Computational Biology)
IBRO (International Brain Research Organization)
IBS (Indian Biophysical Society) Life-membership No.: 982

Briefings in Bioinformatics (Oxford Academic), Scientific Reports, Biochemical Journal (Portland press), Computational and Structural Biotechnology Journal, Journal of Biomolecular Structure and Dynamics, Enzyme and Microbial Technology, Journal of Medicinal Chemistry, Bioscience Report (Portland press).

• Principal Investigator-Young Scientist Scheme (2016-19), SERB, Govt. of India (Total Cost: 31.50 Lakhs) at School of Computational & Integrative Sciences, JNU, New Delhi-110067.
• Dr. D. S. Kothari Higher Post-Doctoral Fellow, UGC-BSR (2013-16) with Prof. Faizan Ahmad at Center for Interdisciplinary Research in Basic Science, Jamia Millia Islamia, New Delhi-110025.
• CSIR-SRF (Extended) in 2012, from Council of Scientific and Industrial Research (CSIR), India.
• Senior research fellowship (SRF) in 2010 from CSIR, India.
• Meritorious fellowship-2005 from Department of Biotechnology (DBT), CCBB, SIT, JNU.
• Graduate aptitude test for engineering (GATE), 2005.

Faculty of Science Engineering And Technology
Amity University Haryana, Amity Education Valley, Pachgaon, Manesar, Gurgaon, Haryana 122413