Faculty

Dr. Soumyadeep Nandi
Associate Professor
Faculty of Science Engineering And Technology

Amity University Haryana, Amity Education Valley, Pachgaon, Manesar, Gurgaon, Haryana 122413

9 Years & 7 Months

Database Management System (Course Code: DSC3104)
Programming Toolbox Python (Course Code: DSC3106)
Introduction to Linux (Course Code: DSC3108)
Sequence Analysis
Algorithm Optimization and Method Development, Machine Learning, NGS Data Analysis

Publications:

1. A K M Firoj Mahmud, Doo Yang, Per Stenberg, Ilya Ioshikhes, Soumyadeep Nandi
Analysis of cis-regulatory network in Drosophila.
Journal of Computational Biology (27)
Year: 2019

2. Ajay Kumar Saw, Binod Chandra Tripathy, Soumyadeep Nandi
Alignment-free similarity analysis for protein sequences based on fuzzy integral.
Scientific Reports(9)
Page: 2775
Year:2019

3. Ajay Kumar Saw, Garima Raj, Manashi Das, Narayan Chandra Talukdar, Binod Chandra Tripathy, Soumyadeep Nandi
Alignment-free method for DNA sequence clustering using Fuzzy integral similarity
Scientific Reports(9)
Pages: 3753
Year: 2019

4. Sarina Cameron, Soumyadeep Nandi, Tatyana G. Kahn, Juan I. Barrasa, Per Stenberg, Yuri B. Schwartz.
PTE, a novel module to target Polycomb Repressive Complex 1 to the human Cyclin D2 oncogene.
Journal of Biological Chemistry(293)
Pages:14342-14358
Year: 2018

5. Soumyadeep Nandi, Alexandre Blais, and Ilya Ioshikhes
Identification of cis-regulatory modules in promoters of human genes exploiting mutual positioning of transcription factors.
Nucleic Acids Research(41)
Pages: 8822-41
Year:2013

6. Yubing Liu, Soumyadeep Nandi, Andr Martel, Alen Antoun, Ilya Ioschikhes, Alexandre Blais
Discovery, optimization and validation of an optimal DNA-binding sequence for the Six1 homeodomain transcription factor.
Nucleic Acids Research(40)
Pages: 8227-39
Year:2012

7. Soumyadeep Nandi and Ilya Ioshikhes
Optimizing the GATA-3 Position Weight Matrix to improve the identification of novel binding sites.
BMC Genomics (13)
Pages: 416
Year: 2012

8. C Bonhomme, P Renesto, S Nandi, A Lynn, D Raoult
Serological microarray for a paradoxical diagnostic of Whipple’s disease.
Eur J Clin Microbiol Infect Dis (27)
Pages: 959-68
Year: 2008

9. Prashant K Srivastava, Dhwani K Desai, Soumyadeep Nandi and Andrew M Lynn
HMM-ModE - Improved classification using profile hidden Markov models by optimizing the discrimination threshold and modifying emission probabilities with negative training sequences.
BMC Bioinformatics (8)
Pages: 104
Year: 2007

10. Soumyadeep Nandi, Nipun Mehra, Andrew M Lynn, and Alok Bhattacharya
Comparison of theoretical proteomes
BMC Genomics (6)
Pages: 116
Year:2005
Computational Biology, Data Science.
Teaching And Research
Ramalingaswami Fellowship (DBT, Govt. Of India)
Faculty of Science Engineering And Technology
Amity University Haryana, Amity Education Valley, Pachgaon, Manesar, Gurgaon, Haryana 122413